Northwestern University Feinberg School of Medicine

Biomedical Natural Language Processing Lab

Peer-Reviewed Conference Workshop Proceedings

  1. Jonnalagadda S, Moosavinasab S, Li D, Abel M, Chute C, Liu H. Prioritizing journals relevant to a topic for addressing clinicians’ information needs. Proceedings of the International Workshop on Biomedical and Health Informatics in Conjunction with IEEE International Conference on Bioinformatics and Biomedicine. 2013.
  2. Ravikumar KE, Li D, Jonnalagadda S, Wagholikar K, Xia N, Liu H. An ensemble approach for chemical entity mention detection and indexing. BioCreative Challenge Evaluation Workshop vol. 2 (p. 140). 2013.
  3. Li D, Liu H, Chute C, Jonnalagadda S. Towards Assigning References Using Semantic, Journal and Citation Relevance. IEEE International Conference on Bioinformatics and Biomedicine. 2013. [Accepted]
  4. Liu H, Wagholikar K, Jonnalagadda S, Sohn S. Integrated cTAKES for Concept Mention Detection and Normalization. CLEF 2013 Evaluation Labs and Workshop. 2013.
  5. Jonnalagadda S, Cohen T, Wu S, Liu H, Gonzalez G. Evaluating the Use of Empirically Constructed Lexical Resources for Named Entity Recognition. Computational Semantics in Clinical Text (CSCT) workshop, Potsdam, Germany. 2013.
  6. *Sohn S, Clark C, Halgrim S, Murphy S, Jonnalagadda S, Wagholikar K, Wu S, Chute C, Liu H. Analysis of Cross-Institutional Medication Information Annotation in Clinical Notes. Computational Semantics in Clinical Text (CSCT) workshop, Potsdam, Germany. 2013. (Best paper award)
  7. *Sohn S, Wagholikar KB, Li D, Jonnalagadda S, Tao C, Komandur-Elayavilli R, Liu H. Comprehensive Temporal Information Detection from Clinical Text: Medical Events, Time, and TLINK Identification. 2012 I2B2 NLP Challenge for Temporal Expression Extraction. 2012;
  8. *Jonnalagadda S, Del Fiol G, Medlin R, Weir C, Fiszman M, Mostafa J, Liu H. Automatically Extracting Sentences from Medline Citations to Support Clinicians’ Information Needs. IEEE Healthcare Informatics, Imaging, and Systems Biology Conference, UCSD, La Jolla, CA. 2012. (Best paper award)
  9. *Jonnalagadda S, Petitti D. A New Iterative Method to Reduce Workload in Systematic Review Process. International Conference on Intelligent Biology and Medicine, Nashville, TN. 2012. (Travel Award)
  10. *Jonnalagadda S, Li D, Sohn S, Wu S, Wagholikar K, Torii M, Liu H. Coreference analysis in clinical notes: A multi-pass sieve with alternate anaphora resolution modules. Proceedings of the i2b2/VA/Cincinnati 2011 Challenge. 2011.
  11. Emadzadeh E, Jonnalagadda S, Gonzalez G.  Evaluating Distributional Semantic and Feature Selection for Extracting Relationships from Biological Text.  Proceedings of the International Conference on Machine Learning Applications. 2011.
  12. Jonnalagadda S, Gonzalez G. Can distributional statistics aid clinical concept extraction? Proceedings of the 2010 i2b2/VA Workshop on Challenges in Natural Language Processing for Clinical Data. Boston, MA, USA: i2b2, 2010.
  13. Jonnalagadda S, Tari L, Hakenberg J, Baral C, Gonzalez G.  Towards effective sentence simplification for automatic processing of biomedical text.  Proceedings of the North American Association of Computation Linguistics and Human Language Technology. 2009.
  14. Jonnalagadda S, Topham P, Gonzalez G.  Towards automatic extraction of social networks of organizations in PubMed abstracts.  Proceedings of the International Workshop on Graph Techniques for Biomedical Networks in Conjunction with IEEE International Conference on Bioinformatics and Biomedicine. 2009.
  15. Jonnalagadda S, Topham P, Gonzalez G.  ONER: Tool for organization named entity recognition from affiliation strings in PubMed abstracts.  Proceedings of the International Symposium on Languages in Biology and Medicine. 2009.
  16. Jonnalagadda S, Gonzalez G.  Sentence simplification aids protein-protein interaction extraction.  Proceedings of the International Symposium on Languages in Biology and Medicine. 2009.
  17. Hakenberg J, Leaman R, Vo N, Jonnalagadda S, Sullivan R, Miller C, Tari L, Baral C, Gonzalez G.  Online protein interaction extraction and normalization at Arizona State University.  Proceedings of the BioCreative II.5 Workshop. 2009.